rs32253471 SNP Detail

Summary

• ID
  rs32253471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135962447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAATCT TCTGGAATGA
  CTTGATACTG CCTCCCACCA CCGCTTTGTT TGCAGTATCA GATCAGACAG AATATTTTTT
  TACACTCAAA CGAATTTCTG CAGACTCGTG CCTGCAATTA AAAGAGAAAC TGCATATCTC
  AGTCAGTTAA CATTCAAAGG CATTATAGTT AACCCTTTGA AATGGAAAAT AAATAAAATG
  M
  AAAATGAAGA TGCTATATAG AGGGCCATGA ATGGGAATGC CAGCAACACA CATATCCCTC
  CCTTCCTAAC AGACTTGCTT TGGGGAATGG TTAAAAGGAA GCCTTTTGTT AAAAAAAAAA
  AAAACAAAAA AAAAAACGTG AGAAAGGTGG TTTCGATTTT ACATCATTGA GGCTGGGTTT
  TTTTTTCTTT TTTCTTTTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366846044	MGP_WTSI_5_136409463	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32253471					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366846044	MGP_WTSI_5_136409463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135962447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	345 bp proximal
Gm40346	predicted gene, 40346	within coordinates
Gm57297	predicted gene, 57297	1088 bp upstream
Rr378682	regulatory region 378682	156 bp upstream
Rr622478	regulatory region 622478	880 bp distal
Rr622479	regulatory region 622479	617 bp distal
Rr622480	regulatory region 622480	within coordinates
Rr622481	regulatory region 622481	951 bp proximal
Rr622482	regulatory region 622482	1099 bp proximal
Tssr49205	transcription start site region 49205	1496 bp upstream
Tssr53779	transcription start site region 53779	107 bp downstream
Tssr53780	transcription start site region 53780	964 bp downstream
Tssr53781	transcription start site region 53781	997 bp downstream
Tssr53782	transcription start site region 53782	1026 bp downstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	within coordinates