rs32254523 SNP Detail

Summary

• ID
  rs32254523
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118088835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTATGAGA CCACCCAAGA TACTCTAATA GGTCTGCAGA
  AGATGCCACT GATATCTTAG GCCATAGAGC CTAGGACAGA ACATTTGTGC CATCAAATCC
  W
  GTGACATCCT TCAAATTTTC CCACACCTTG AACAGCTCTT CTTGAATTTA GCTGCCATCC
  GCTCTCTCAT CTCATGGGAA AGGGGCATTT GGTCAGGTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46123757	mCV27568687	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					T		A
ss47171730	NES11585622	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		T		T	T	T	T	A	T
ss145780897	ENSMUSSNP5036058	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32254523					SNP	?	A	A	T	A	T	A	T	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47171730	NES11585622	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118088835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	123 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr654485	regulatory region 654485	979 bp distal
Rr654486	regulatory region 654486	1069 bp distal
Tssr74440	transcription start site region 74440	1324 bp upstream
Tssr74441	transcription start site region 74441	1854 bp downstream