rs32257088 SNP Detail

Summary

• ID
  rs32257088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4025518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC ATCGACTCTC TCCGCGGGTG
  Y
  AGGGAGATTG CAGCCGCAGC AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39381924	mCV23812966	ABI	CRAMUS_MOUSE	f	SNP	T			C		T
ss49379127	NES12542497	PERLEGEN	MM_PANEL2	f	SNP		C	C		T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32257088					SNP	T	C	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379127	NES12542497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4025518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	within coordinates
Gm2093	predicted gene 2093	3 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	292 bp upstream
Rr369897	regulatory region 369897	within coordinates
Rr498628	regulatory region 498628	303 bp distal
Rr498629	regulatory region 498629	within coordinates
Rr498630	regulatory region 498630	12 bp proximal
Tssr133595	transcription start site region 133595	791 bp upstream
Tssr133596	transcription start site region 133596	276 bp upstream