rs32258777 SNP Detail

Summary

• ID
  rs32258777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136485478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC ATCTGTGGGC CAGTGTCACA
  R
  AGGCCCTGTA ACCCTGACTG CAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45818983	mCV23750588	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss144515002	ENSMUSSNP5902999	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321699554	CHEV_5_136932494	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32258777					SNP	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136485478 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Tssr53839	transcription start site region 53839	1837 bp downstream
Tssr53840	transcription start site region 53840	1883 bp downstream