rs32258778 SNP Detail

Summary

• ID
  rs32258778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136485560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAACA AGTAAGTTAG
  CTGGTGCCAA ATATAAGCAG TCTGCTTGCT TCTGCACAGG CTGAGCCTAA CACAGAAAGG
  GAAATGACCT CAGGCAGCAT CTGTGGGCCA GTGTCACAGA GGCCCTGTAA CCCTGACTGC
  AGACAAAATG GGCATGCTCG AAGTGATCCT ATGACAAGCC TCATTTCAAA ACGGGGCTCC
  R
  TGTGGCACAT ATTATGCTAA GAGATGAGGA GGTGAAGACA TTGACTTCTA CCCACCATAT
  TGGCTCTATT TCTCTCTTTA CATTTTTTTT CAGTGTTGAA ATGGAGGCTG AACTCAGGGC
  CTCTTGCATG CTAGCCAGCT TTCCACTGAT GAGCCACACC CCCAGCCCTC CCACTGTAAG
  AGTCTAGACA GGTGCTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321699555	CHEV_5_136932576	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32258778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136485560 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622611	regulatory region 622611	within coordinates
Rr622612	regulatory region 622612	1690 bp proximal
Tssr53839	transcription start site region 53839	1755 bp downstream
Tssr53840	transcription start site region 53840	1801 bp downstream