rs32258796 SNP Detail

Summary

• ID
  rs32258796
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191820649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC AGAGAGGGGA TACTACCTAC
  W
  TGGTAAGTCC TAATGGGGAG AAGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45125618	mCV25166222	ABI	CRAMUS_MOUSE	f	SNP		A	T	A
ss146513845	ENSMUSSNP2402264	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A		T
ss320197029	CHEV_1_193960231	CHEVERUD	SCREENING_POP	f	SNP					A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs32258796					SNP	A	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191820649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	115 bp proximal
Gm10516	predicted gene 10516	549 bp upstream
Gm37055	predicted gene, 37055	340 bp upstream
Rcor3	REST corepressor 3	within coordinates
Rr29207	regulatory region 29207	within coordinates
Tssr15823	transcription start site region 15823	1227 bp downstream
Tssr15824	transcription start site region 15824	1542 bp downstream
Tssr15825	transcription start site region 15825	1603 bp downstream
Tssr15826	transcription start site region 15826	1646 bp downstream