rs32259193 SNP Detail

Summary

• ID
  rs32259193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172330882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATTGAG GGCGAGCGTG
  CTGGCTCCCC TTTCTGCCCA GGTCTCAGCC ACTCCACTAC CTGCATTCAT CAAGCTGAGT
  GCGTGTGTGG CCTGCGGTGC GGTGTGGGTC GGGACCGAGC CTGACATTTA TCTGGTCTGG
  CTGGGGGGGA CGTCTCCTAA TGAACTTAAA AATAACTAAT TTATGGGGAA AGATCCTGCC
  R
  GAAATATGCA GCTGGATAAA CCCAGAGTTA GAAAGGAGCA GCCATGTTGG AGGGTGGGGG
  AAGGGAGTGA CCCACCACAC AACCTCTGCC CAGACGTATG ACATTATTAG CAATGGACTT
  ATTAGCCTGG CTTCTTTGGC GGAGCACCAG AGCCCATTGA GGGGGTGGTG GGAGCGTTTA
  ACCTGGGGTG CATGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45125538	mCV22750468	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss320125766	CHEV_1_174433446	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32259193					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172330882 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	within coordinates
Rr29014	regulatory region 29014	918 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10217	transcription start site region 10217	1326 bp downstream
Tssr10218	transcription start site region 10218	723 bp downstream
Tssr10219	transcription start site region 10219	1948 bp upstream
Tssr15225	transcription start site region 15225	1698 bp upstream