rs32259629 SNP Detail

Summary

• ID
  rs32259629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136488127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC TTCAACCACA GCCCAAGGGC
  Y
  AAATCTAATC AGTATCCCAC TCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45735870	mCV23750271	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss144515034	ENSMUSSNP5410017	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321699564	CHEV_5_136935143	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32259629					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136488127 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622612	regulatory region 622612	15 bp distal
Rr622613	regulatory region 622613	690 bp proximal
Tssr1673	transcription start site region 1673	1046 bp upstream
Tssr53839	transcription start site region 53839	793 bp upstream
Tssr53840	transcription start site region 53840	753 bp upstream
Tssr53841	transcription start site region 53841	707 bp downstream