rs32260112 SNP Detail

Summary

• ID
  rs32260112
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153615409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AACATGGTAA ATTCAAAGCT
  S
  GATTGAGGCA CCAAGACTTA CCCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45126406	mCV24630830	ABI	CRAMUS_MOUSE	f	SNP	G	G				G	C
ss60819983	NES16431209	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G			C	G	G	G	G	C
ss145749123	ENSMUSSNP1037481	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32260112					SNP	G	G	G	G	G	G	C	C	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819983	NES16431209	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153615409 () rs orientation: forward

Symbol	Name	Function Class
C230024C17Rik	RIKEN cDNA C230024C17 gene	1834 bp upstream
Cpgi870	CpG island 870	500 bp proximal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	690 bp upstream
Rr420740	regulatory region 420740	1845 bp distal
Rr420741	regulatory region 420741	1451 bp distal
Rr420742	regulatory region 420742	within coordinates
Rr420743	regulatory region 420743	547 bp proximal
Tssr9477	transcription start site region 9477	681 bp upstream
Tssr9478	transcription start site region 9478	872 bp upstream