rs32260495 SNP Detail

Summary

• ID
  rs32260495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136488951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCT GAAACCACAG AACGGCACGC
  R
  TCAATGTGGT GAAAAGTAGA ACTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45792221	mCV23750269	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss144515045	ENSMUSSNP2889822	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
ss321699566	CHEV_5_136935967	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32260495					SNP	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136488951 () rs orientation: forward

Symbol	Name	Function Class
Cux1	cut-like homeobox 1	within coordinates
Rr622612	regulatory region 622612	839 bp distal
Rr622613	regulatory region 622613	within coordinates
Tssr1673	transcription start site region 1673	222 bp upstream
Tssr53839	transcription start site region 53839	1617 bp upstream
Tssr53840	transcription start site region 53840	1577 bp upstream
Tssr53841	transcription start site region 53841	108 bp upstream