rs32261393 SNP Detail

Summary

• ID
  rs32261393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:44150989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTAAAATG ACAGCTGTAC CCAGACCTGT CTTGGCTGTC
  CTTTGTGGGT GGTGACAGGC CTGTGTCCTC CTCTCTGTAG GTAATGTTCA AGAGAGTTTA
  R
  GCCACAGGGC ATGAGCTCCA CCTTTGACTC TTGTAAATGC CATGACAAGC AGTTCCCCCA
  GCAGACGCTG TCTTCCAAGA TGGTGACCGC AATGACTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46124630	mCV25287553	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss51891390	NES14911106	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	G	G	G	A	G
ss149113618	ENSMUSSNP6244507	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32261393					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891390	NES14911106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44150989 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18970	CpG island 18970			1115 bp distal
Garin5a	golgi associated RAB2 interactor 5A			Coding
				Coding-NonSynonymous
				mRNA-UTR
Gm44646	predicted gene 44646			124 bp upstream
Mybpc2	myosin binding protein C, fast-type			134 bp downstream
Rr646111	regulatory region 646111			8 bp proximal
Rr646112	regulatory region 646112			135 bp proximal
Rr646113	regulatory region 646113			343 bp proximal