rs32261860 SNP Detail

Summary

• ID
  rs32261860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GGAAGGAAAG GTCTTGGTCA
  Y
  GCCCAGGGTC CCGTCTCTGG GTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46124804	mCV23833174	ABI	CRAMUS_MOUSE	f	SNP	C	C		T	T
ss60987111	NES16140781	PERLEGEN	MM_PANEL2	f	SNP			T				C	T	C	C
ss148642708	ENSMUSSNP1343481	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			T
ss322127377	CHEV_7_29939577	CHEVERUD	SCREENING_POP	f	SNP						C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs32261860					SNP	C	C	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987111	NES16140781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853983 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1122 bp upstream
Cpgi18740	CpG island 18740	741 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Gm73440	predicted gene, 73440	1895 bp downstream
Rasgrp4	RAS guanyl releasing protein 4	597 bp downstream
Rr400219	regulatory region 400219	1554 bp upstream
Rr644490	regulatory region 644490	330 bp distal
Rr644491	regulatory region 644491	632 bp proximal
Rr644492	regulatory region 644492	1144 bp proximal
Rr644493	regulatory region 644493	1615 bp proximal
Rr644494	regulatory region 644494	1638 bp proximal
Rr644495	regulatory region 644495	1763 bp proximal
Tssr65599	transcription start site region 65599	1085 bp upstream
Tssr65600	transcription start site region 65600	1113 bp upstream
Tssr65601	transcription start site region 65601	1186 bp upstream
Tssr71610	transcription start site region 71610	1039 bp downstream
Tssr71611	transcription start site region 71611	1064 bp downstream
Tssr71612	transcription start site region 71612	1159 bp downstream
Tssr71613	transcription start site region 71613	1378 bp downstream
Tssr71614	transcription start site region 71614	1405 bp downstream
Tssr71615	transcription start site region 71615	1614 bp downstream