rs32265737 SNP Detail

Summary

• ID
  rs32265737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136722379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCCAGA AGAGCCCGCA
  AGAGAGTAGA AGGCACAGCC AGCTCCAATG TCTTTTCGAT GTTCGATCAG TCCCAGATTC
  AGGAGTTTAA AGAGGTTGGT TGGTGGCCCT GGTGACCCTG GGGACCCTGG GAGTCTATAT
  TAGTTAGATT TCTTGTTGCT GCAACAAAGT GCCTGACAAA AGCGATTTAA GGAAGGAAGG
  M
  GTCCCTAATT CTGGCTCACA GTTCTACAGT CTGTGAGGGT TGGGGAAGGC ATAGGGGCAG
  GAACATGAGC TGGTTACACA CACACACACC GGCAGCCAGG GGCAGGAAGT CAAGAGAGGT
  GAAAGCCAGC GCTCAGCTCA TGTCTCCGTT TCATTCAGTC AAAAACCCAG CCCGTGGGAT
  AGTGCCGCCC TCACTTAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366861104	MGP_WTSI_5_137169395	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32265737					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366861104	MGP_WTSI_5_137169395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136722379 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	within coordinates
Myl10	myosin, light chain 10, regulatory	within coordinates
Rr120856	regulatory region 120856	1509 bp proximal
Rr127468	regulatory region 127468	1379 bp distal
Rr127469	regulatory region 127469	379 bp distal
Tssr49256	transcription start site region 49256	1996 bp downstream
Tssr49257	transcription start site region 49257	688 bp downstream
Tssr49258	transcription start site region 49258	555 bp downstream
Tssr49259	transcription start site region 49259	495 bp downstream
Tssr49260	transcription start site region 49260	421 bp downstream
Tssr49261	transcription start site region 49261	71 bp upstream
Tssr49262	transcription start site region 49262	89 bp upstream
Tssr49263	transcription start site region 49263	132 bp upstream
Tssr49264	transcription start site region 49264	142 bp upstream
Tssr49265	transcription start site region 49265	596 bp upstream
Tssr49266	transcription start site region 49266	618 bp upstream
Tssr49267	transcription start site region 49267	688 bp upstream
Tssr49268	transcription start site region 49268	1666 bp upstream
Tssr49269	transcription start site region 49269	1679 bp upstream
Tssr49270	transcription start site region 49270	1690 bp upstream
Tssr49271	transcription start site region 49271	1715 bp upstream