rs32267545 SNP Detail

Summary

• ID
  rs32267545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136011395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAT
  AAGTCCTTAT ACTGCCTGGC TCCAGGCTAG TACCTGGGGT AGAGACAGGC AGGCTGTTGC
  TAGGTAACTG CTGGGCGGAG CCTAGAGGGA TGCTAACCAC CACCACCACC AGTAATTCCA
  GCAGGAACCG AACACTCTCT TCTGGCTTCT CCAGGCACCT GTACTCACAT GCTCATATCC
  Y
  TCCCCTTTAT AAATAATTAA AGATAAAATA AAATTTAAAA AAGGAAATGG GCCTGGAGAG
  ATTTTTCTGA AAGATACCCA GCCTAGGTCT GTCCAATCTT TATGCCCATA TTCTGGCTGT
  TGTAAATCCT TCAGGATTCT AACTCACATG GTGGCTGGAT ACATTTTACA GTAGGTAGAA
  TAGTGCAATT TTGTGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45627903	mCV25110936	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147564549	ENSMUSSNP7023434	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs32267545					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136011395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	1736 bp proximal
Rr398613	regulatory region 398613	1161 bp upstream
Rr602339	regulatory region 602339	682 bp distal
Rr602340	regulatory region 602340	within coordinates
Rr602341	regulatory region 602341	1493 bp proximal
Rr602342	regulatory region 602342	1994 bp proximal
Tssr39694	transcription start site region 39694	553 bp upstream
Tssr39695	transcription start site region 39695	574 bp upstream
Tssr39696	transcription start site region 39696	624 bp upstream
Tssr39697	transcription start site region 39697	1977 bp upstream
Zfp46	zinc finger protein 46	599 bp upstream