rs32269859 SNP Detail

Summary

• ID
  rs32269859
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24098160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGCTGAC ATGGAGATCA
  GCTCTGGGGA CAAGCACGCA TGTGTGCTTG TGTCTTGAAA TGCAGATCAG TGGTAGAGCA
  CATCCTACAT AGCAAGGCCC TCTCTCTTTT CTCAGTACAG AAGAGAATGG GAGAGAATAA
  CGAAAAGCCG AGGGGGTGGG GAGAGCCCAG CAGTCCTGAG GCCAAGGCAG GTGGGTTTCT
  K
  TGAGTTCTAG ACCAGCCTGG TCTACACAGT AAGACCCCAC CTCAAAACAA GAGAGCTGCC
  TTTAATCCCA GCACTTGGGA GGCAGAGGCA GGCGGATTTC TGAGTTTGAG ACCAGCCTGG
  TCTACAGAGT GAGTTCCAGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCAAAACAAA
  CAAACAAACA AACAAACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46125441	mCV25416644	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss148598567	ENSMUSSNP4968001	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32269859					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24098160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	451 bp proximal
Gm74022	predicted gene, 74022	276 bp downstream
Rr643435	regulatory region 643435	1352 bp distal
Rr643436	regulatory region 643436	486 bp distal
Rr643437	regulatory region 643437	394 bp proximal
Rr643438	regulatory region 643438	895 bp proximal
Rr643439	regulatory region 643439	1190 bp proximal
Rr643440	regulatory region 643440	1838 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	946 bp upstream
Tssr64959	transcription start site region 64959	871 bp upstream
Tssr64960	transcription start site region 64960	939 bp upstream
Tssr64961	transcription start site region 64961	1078 bp upstream
Tssr64962	transcription start site region 64962	1224 bp upstream
Tssr64963	transcription start site region 64963	1242 bp upstream
Tssr64964	transcription start site region 64964	1278 bp upstream
Tssr71075	transcription start site region 71075	1123 bp downstream