rs32270927 SNP Detail

Summary

• ID
  rs32270927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137090306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCCCCT CACCTTTATT
  TCATTATTAT TATCTGTGTG TGGGAGTGGG GGAGCATGTG CCATGTTTTG TGTGTGGAGG
  TCAGAGGACA GCTTTCAGGG ACCGGTTCTC TCCTCCCATC ATGCGGGATT CAGAGTGTTT
  GAACTCAGGT CATCGGTTTC CGGTGGCACG TGTTCTACCC ACTGAGCCAC TTTACCAGCC
  Y
  ACACTCCTGT TTTACTTCCT TGAGAAGACA CAGAAGGCAA CAAGCAACCA ATTTTGTTTG
  CATATTCTCT ATATTTAGTA TTTTTTAAAA AACATATTTA CCTGTTTATA TATCAAAAGT
  GAAGACAAAC AACAACAAAA AGGCATATGT AACCAACAAA ATTCAAGACC ATGTGACCCC
  ACATTTGGGG CCCTATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701456	CHEV_5_137537322	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32270927					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137090306 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	402 bp proximal
Rr622786	regulatory region 622786	819 bp proximal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	52 bp downstream
Tssr53888	transcription start site region 53888	474 bp downstream
Tssr53889	transcription start site region 53889	597 bp downstream
Tssr53890	transcription start site region 53890	1200 bp downstream
Tssr53891	transcription start site region 53891	1533 bp downstream
Tssr53892	transcription start site region 53892	1607 bp downstream