rs32270929 SNP Detail

Summary

• ID
  rs32270929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137090547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCAACCA ATTTTGTTTG
  CATATTCTCT ATATTTAGTA TTTTTTAAAA AACATATTTA CCTGTTTATA TATCAAAAGT
  GAAGACAAAC AACAACAAAA AGGCATATGT AACCAACAAA ATTCAAGACC ATGTGACCCC
  ACATTTGGGG CCCTATGGGT ACACGGTGTG TGGCTGTCCA GTGCATAATG AAAAGAGAGG
  R
  AAAAAAAATC AGAGAGAAAG AGGGAGAGAG AGAAAAGCAA AAACACCAAC ATGATTATTT
  TTTTTCCGGT GGAGACATAA CAGATGCAGA GTGGCCTGCT AGGAAATTAC ATTCACGGTA
  CCTTCTTGTG CAGTTTTTCA GTAAATTGGT TTTCTGATCA TACCTCCAGC TAGGAAGCTT
  TCAAAAAAGA TTATCTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701457	CHEV_5_137537563	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32270929					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137090547 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	161 bp proximal
Rr622786	regulatory region 622786	578 bp proximal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	within coordinates
Tssr53888	transcription start site region 53888	233 bp downstream
Tssr53889	transcription start site region 53889	356 bp downstream
Tssr53890	transcription start site region 53890	959 bp downstream
Tssr53891	transcription start site region 53891	1292 bp downstream
Tssr53892	transcription start site region 53892	1366 bp downstream