rs32270933 SNP Detail

Summary

• ID
  rs32270933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:137091740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTATC CGTTGCCCCT
  TGGAGGTGGG CAAGGTGGAC ATTTCCACAG TGGACCTTGA GATAGGACAG TGCTTTTTCC
  TTTGGCCCAT GGCCACCCTC CACAGCAATG GCAGGCGATG CAAGAGGTGC CCACAGTGTG
  ACTGGAACAC AAACGATTTT GCTGAATGAA AGTGTTGTGC CCTCCACTCT GCTGGGGCCT
  Y
  GGTGGGAACT GGGTCCAAAG GGCATGCTGG GCAGATCCAG GTACTGTGAG TTCTATGGTC
  CATGAGACCT TTGTGGGGTA GGAATCCCTA GGGAGGAGGG AGTTAGACTC TTTTCCCTTC
  AAGAGTCCGA GGTCTGGGAT GCTGGTTGGA AAGATTACCA GTGTGGGGGG TAAGGAGGAG
  TTGCCTTCTC TTTCTCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701458	CHEV_5_137538756	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32270933					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137091740 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	490 bp distal
Rr622786	regulatory region 622786	594 bp distal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	mRNA-UTR
Tssr53888	transcription start site region 53888	956 bp upstream
Tssr53889	transcription start site region 53889	821 bp upstream
Tssr53890	transcription start site region 53890	224 bp upstream
Tssr53891	transcription start site region 53891	99 bp downstream
Tssr53892	transcription start site region 53892	173 bp downstream