rs32271401 SNP Detail

Summary

• ID
  rs32271401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89531357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC CTCTTTGGTG TCAGGGGACT
  R
  TCTTCCTGGC CTGCTTGGCA CCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45126682	mCV25259016	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss144924417	ENSMUSSNP620733	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32271401					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89531357 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr23524	regulatory region 23524	1044 bp proximal
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	375 bp downstream