rs32271420 SNP Detail

Summary

• ID
  rs32271420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133092753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGCCCCTG CCTCTCCCAC CTGCTCACTG CGGACTCCTG
  CAGCTCCTCC CCCTGCCTGC TGCTTCCCCG GGTCTGTGGT CAGGAGGCAG AAGAAAGCCT
  Y
  AGGCTTGAAG AATCCTTTAG GGGGAGGCTT TGCTGATCTC AGTGATAAAT TAGCACTGTT
  CTATTAATTC CATAAACCAA ATGGCTGTGG CATAATCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45126979	mCV24901135	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss145490355	ENSMUSSNP1537884	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32271420					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133092753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	190 bp distal
Plekha6	pleckstrin homology domain containing, family A member 6	within coordinates
Tssr211	transcription start site region 211	1070 bp downstream
Tssr8784	transcription start site region 8784	1094 bp downstream
Tssr8785	transcription start site region 8785	976 bp downstream