rs32271828 SNP Detail

Summary

• ID
  rs32271828
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:137093099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCAAAC TTCCTCTGAG
  CCCCAGGATC CTATTAGTCA CAAACATATT TAGGGCTCAT GGCACATCCT TTAAGTTCAC
  TCCCACTGTG ATTACACCTC AGGCTTGTTT GGGGGGGTCC TTGTCACACA CTGGCCCTTC
  AGGAGCCAGA TGAGGCAGCA GGGTCCCAGG GGAAGTGAAT CCGTTTTTTT CACACTGAGG
  W
  ACGGGTTCGG GAAAGGATGA CTACTGGGCT CACACTAGCT TTCCTGTGGG GTGATTGCCA
  TCCCAGGAGG TGGGCGAACA CAGGCAGAGA GCCACACTCA CCTGTGGAGG AAGACGCCAC
  TGTGCCGCTC TCGTTTACCT CGATCCTGAC CTTTTGCAGT GCCTGTGCTA CAGAGAGCTG
  CTCTTGGTCT GTAACAGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701459	CHEV_5_137540115	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32271828					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137093099 () rs orientation: forward

Symbol	Name	Function Class
Rr622785	regulatory region 622785	1849 bp distal
Rr622786	regulatory region 622786	1953 bp distal
Serpine1	serine (or cysteine) peptidase inhibitor, clade E, member 1	Intron
Tssr53890	transcription start site region 53890	1583 bp upstream
Tssr53891	transcription start site region 53891	1240 bp upstream
Tssr53892	transcription start site region 53892	1163 bp upstream