rs32273223 SNP Detail

Summary

• ID
  rs32273223
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGATCTGCTT AGCTGCATAC TGAAACCCTA CCTGAATTTA CAGGTACAGT GGGAGATTGG
  AGGCTGCTTC TCCATGAGCC TAGGAAGGAG AGAGTAAGTC TGAACGAGAA ACGGATTATA
  TCCCAAAGTG AAAAAGGAAA GAGCAACTGG GCGTGGTGGC GCACGCCTTT GATCCCAGCA
  CTTGGGAGGC AGAGGCAGGC GAATTTCTGA GTTCGAGGCC AGCGTGGTCT ACAGAATGAG
  TTCCAGGACA GCCAAGGCTA TACACAGCAA ATCCTATCTC GAAAAAGCCA AAAAAAAAAA
  W
  AATTAATTTT TTTTTTAAAA AAGGAAAGGA AAGAACTTCA GAGAGCTTCA GAAATCTACA
  CAAGTGAAAC AAAGGGGTCA GAAAAAAAAA TAGGGAAGGG AAGAGGTGGG GAAGGCACCA
  AGCTCAGCCT CAGCCATACA GTTCCCATCC ACTTCCAAAA GGTAAGCCAA ATGAAACGCA
  GGCAGTCCTA TACCCAGAAC AAGCCCACAA CCCTTGTAAG CCTTAAATCC AGGTTTGACG
  CAGCAGTAAT TGCCCCAGCA GAAAAATTCA ACAGCAGAGA GAATCTTATC TTGTCACACT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46125381	mCV24293530	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32273223					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	851 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	1152 bp downstream
Rr656042	regulatory region 656042	1000 bp distal
Rr656043	regulatory region 656043	228 bp distal
Rr656044	regulatory region 656044	742 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1372 bp upstream
Tssr2414	transcription start site region 2414	1894 bp upstream
Tssr69425	transcription start site region 69425	1115 bp downstream
Tssr75110	transcription start site region 75110	1912 bp upstream
Tssr75111	transcription start site region 75111	1763 bp upstream
Tssr75112	transcription start site region 75112	1702 bp upstream
Tssr75113	transcription start site region 75113	1689 bp upstream
Tssr75114	transcription start site region 75114	1529 bp upstream
Tssr75115	transcription start site region 75115	1467 bp upstream
Tssr75116	transcription start site region 75116	1427 bp upstream