rs32277791 SNP Detail

Summary

• ID
  rs32277791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC AAGCAAATCT GTTATCATCG
  W
  GACACCAACT ATTCAGTTGA GCTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45128493	mCV23265294	ABI	CRAMUS_MOUSE	f	SNP		A	T					T	A
ss51365824	NES14471126	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	T		A	T	T		T	T		A
ss145481842	ENSMUSSNP5975956	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						A
ss319975146	CHEV_1_133641463	CHEVERUD	SCREENING_POP	f	SNP												T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32277791					SNP	A	A	T	A	T	A	T	T	A	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365824	NES14471126	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672624 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1795 bp proximal
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	857 bp downstream
Tssr8661	transcription start site region 8661	691 bp downstream