rs32279984 SNP Detail

Summary

• ID
  rs32279984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136012932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCGCGG ACAGCACTCC
  AGCACCGGAC AGGGGACGCG AGGCCTCGTG GGATATGTAG TCTGGGGTGG GTTGTGACTG
  CCGGAAGGCC TACTGGGAGT TGTAGTTCTC AGTATCCAGA AAGCGAGAGC TTCAGGCGGT
  GTTGGGAGTC CGTGGGCGGG GCCCAAAGTT CCATCCCGGC CAGGGAGTCT CCCAAGGGAG
  R
  GAAAAGAAGC CTTTTCCCGC TCTGGCCTGG GCTGTCAAAT GAGGGGTGAT CTCAGCTGAG
  GTCAGCCCGA GCTTCCACAC TCAATCTAAC CTCGCGGATA ATATATGACT CAAAGATGGT
  CGTAGGGCCA TGAGAAAAAA AAAAAAACAC AGACGCTTCC TTTGCTGAGT CGTGCTGTGG
  TTTCCGAGAA AAAAGTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45628558	mCV25110911	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147564594	ENSMUSSNP6535506	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32279984					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136012932 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			199 bp proximal
Rr398613	regulatory region 398613			75 bp downstream
Rr602340	regulatory region 602340			1045 bp distal
Rr602341	regulatory region 602341			within coordinates
Rr602342	regulatory region 602342			457 bp proximal
Tssr39694	transcription start site region 39694			969 bp downstream
Tssr39695	transcription start site region 39695			935 bp downstream
Tssr39696	transcription start site region 39696			904 bp downstream
Tssr39697	transcription start site region 39697			440 bp upstream
Tssr39698	transcription start site region 39698			494 bp upstream
Tssr39699	transcription start site region 39699			557 bp upstream
Zfp46	zinc finger protein 46			Intron
				Noncoding-Transcript-Variant