rs32280678 SNP Detail

Summary

• ID
  rs32280678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156665394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTG AAAGGGCCCA GTCACCCCTG
  R
  GCTGGTGGTC CTATGGCTGG GTGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45128524	mCV24596589	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss145806672	ENSMUSSNP2937988	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32280678					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156665394 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	1101 bp upstream
Gm28693	predicted gene 28693	1885 bp upstream
Gm68672	predicted gene, 68672	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Tssr9579	transcription start site region 9579	1079 bp upstream
Tssr9580	transcription start site region 9580	1091 bp upstream