rs32281105 SNP Detail

Summary

• ID
  rs32281105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192925107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA TGAATGATAT CAAATAGAGC
  Y
  AAACTCAAGC CAAATCTCAC CCTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45128271	mCV27576353	ABI	CRAMUS_MOUSE	f	SNP		C	C		T	C
ss46776333	NES10634766	PERLEGEN	MM_PANEL2	f	SNP	T		C	C		C	C		C	C
ss146525872	ENSMUSSNP1647403	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss320201227	CHEV_1_195068993	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs32281105					SNP	T	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46776333	NES10634766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192925107 () rs orientation: forward

Symbol	Name	Function Class
1600010F14Rik	RIKEN cDNA 1600010F14 gene	within coordinates
D1Mit512	DNA Segment, Chr 1 Massachusetts Institute of Technology 512	1498 bp distal
Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1	within coordinates
Rr372662	regulatory region 372662	within coordinates
Rr426486	regulatory region 426486	181 bp distal
Rr426487	regulatory region 426487	within coordinates
Rr426488	regulatory region 426488	876 bp proximal
Tssr15848	transcription start site region 15848	1266 bp upstream
Tssr15849	transcription start site region 15849	431 bp upstream
Tssr15850	transcription start site region 15850	366 bp upstream