rs32283381 SNP Detail

Summary

• ID
  rs32283381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160763198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGTCGGGGC TATACAGAGA AACCCTGTCT CAAAAAACAA AACAAACAAA AAACAAAAAC
  AAAACAAAAC AAAAAAACTC TTCTACAACT GTATTTCCTA GAGATCCAAC ACCAGCGTCT
  TGCTTCCTTG GACACTAGGC ATGCTAATAG TGCACTTTCT ATGCATGGAG GCAAAACACT
  CATACAGATA AAATAAATCA GTGTTGGAGA GATGGCTCTT TAAATTTTTA AGCATATATG
  TAAGTGCCTC CAAATTCTAG AAGAGGGTGT GCAGTAACGT GCCCCCCACC CCCCCGTGCG
  Y
  GCACTAGCCT CCTGCACACA GTTTACATGC TTAGTATTAG CTGTTAATTT TTTTAAACAT
  GTATTTTATT TATATGAGTA CACTGTAGCT GTCTTCAGAT ACACCAGAAG ATGGCATCAG
  ATCCCATCTG ATGGGATGGT TGTGAGCCAC CATGTGGTTG CTGGGAATTC AGGACCTCTC
  TCTGGAAGAG TAGTCAGTGC TCTTAACTAC TAAGCCATCG CTCCAGCCCC CAGCTGTTAA
  ATTTTTATTC GTTAACAGTC TTTCAGAAGA TGGGGTTGGG GTGGGGGTGT ATATTGAGTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45128916	mCV22664689	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145902340	ENSMUSSNP4838928	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32283381					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160763198 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	1602 bp distal
Rr421729	regulatory region 421729	1178 bp distal
Rr421730	regulatory region 421730	1292 bp distal
Rr421731	regulatory region 421731	1055 bp distal
Rr421732	regulatory region 421732	100 bp proximal