rs32284200 SNP Detail

Summary

• ID
  rs32284200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137637674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCACGGA GGCCTGGCCC
  AGCCTGGCGT CTCCTTCCCC TCTCCTTCCT CAGCCCACAA CTCCTGTTAT CGAGGAGGGG
  AAGGGATGGA GGGAGTGACC TTGCTGACCC CAGCTGCTGC TTCTGTCTCT GCTTCCAGGT
  CCTAGAGTCG CGGCTGCAGC AGCCCCTACC TGAGGACCTG GCAGAAGCTC TCGCCAACGG
  R
  GTCCTCCTTT GCCAGCTGGC GAACCAGCTG CGGCCCCGCT CTGTACCCTT CATTCATGTG
  CCCTCACCTG CTGTGGTCAG TGGGAGCCCA AAAGGAAGAA GAGGGGAAGG GACGTGACTG
  TGGCTTTGCC TTTCCAAATT TCTTCCCTTT CTCCTCTGTC TCCAGCCAAA GCTCAGTGCT
  CTCAAGTCTC GGAAGAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45790729	mCV25206078	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss321702654	CHEV_5_138080640	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32284200					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137637674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	1703 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Tssr49363	transcription start site region 49363	905 bp downstream
Tssr49364	transcription start site region 49364	1864 bp upstream