rs32285569 SNP Detail

Summary

• ID
  rs32285569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38705056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCACA CATGTGGAGA
  TCAGAGGCTG ACGTCAGAGG CTGATGTCAG CTGTCTTCCT CAAGTGTTCT CTCTACTTTC
  CACACTGAAG CAAGGTCTCT GGTTGAGCTG GGGCTTAGGT TAGTCTAGCT AGCCAGGTTG
  CTCCAAAGTT TTCCATCTTC ACCTCCCTCT TGCTTGGATT ATAAGTAGGC CCCTATGCCC
  R
  TTTGGCATTT ATGTGGGTGC TGGGAATCTG AACTCTGTCC ATTATAGTCA CATGCCAAGT
  GCTTTGCCCT TTAGCCAACT CCCTGAAGCC AGATTTAGTT TCTTGTCAAA GCTCTCCCGG
  ATCTCCAACT GCCTGGACAT CTAAGAAACC AGGACTAAAA CTTAATCTAG CCTCTAGAGT
  GTAATGGTTT CCTAGAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45129323	mCV24885326	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs32285569					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38705056 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	1020 bp upstream
Rr366875	regulatory region 366875	820 bp downstream
Rr409725	regulatory region 409725	1031 bp distal
Rr409726	regulatory region 409726	562 bp distal
Rr409727	regulatory region 409727	within coordinates
Rr409728	regulatory region 409728	276 bp proximal
Tssr11346	transcription start site region 11346	1042 bp upstream
Tssr11347	transcription start site region 11347	1030 bp upstream
Tssr11348	transcription start site region 11348	975 bp upstream
Tssr11349	transcription start site region 11349	963 bp upstream
Tssr11350	transcription start site region 11350	941 bp upstream
Tssr11351	transcription start site region 11351	376 bp upstream