rs32285994 SNP Detail

Summary

• ID
  rs32285994
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137641221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGCTGT TCTGGGACTG
  ACACATGAAC CACATAGTAC CCCAATAACC ACAGTCCATA GTGTACCCTG CCCCCCACTC
  CTCCACGGGT GCTTTCTTCT CCCCCAAGCT GTTTTGTTGA CAATAAATCA GAGTTTGCAA
  ACCAGGCTGT CTGCAGTGGG ACATGGGCTG CGGATCAGGC TGGGTCCCAT TATACCATTT
  K
  CTCTTCCTCC AGGCCTCCTT ACTCATTGGT CACACACTGC ATGGGGTGGG GAGATCCATT
  GAGCAAGACA GTCAGGGAGA AGGGCACCTT TAATGGGTGG GTTGGGCTGC ACTCTGGGAA
  GTGAGGAACT CGTTTGTGTC TGCTGGGCCC AGAGAAAGGT CAGGTGAGGA CTGGCTGCTT
  GGGGAGCACT GGCTGCTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45764643	mCV25206067	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss144532964	ENSMUSSNP3804357	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss321702670	CHEV_5_138084187	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32285994					SNP	G	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137641221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	1468 bp distal
Cpgi16845	CpG island 16845	1522 bp proximal
Gm20605	predicted gene 20605	60 bp downstream
Irs3	insulin receptor substrate 3	73 bp downstream
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	1860 bp downstream
Sap25	sin3 associated polypeptide	57 bp downstream
Tssr49364	transcription start site region 49364	1624 bp downstream
Tssr54017	transcription start site region 54017	1746 bp downstream