rs32292246 SNP Detail

Summary

• ID
  rs32292246
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9619500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTGGGCC TGGGCCTTGT CTGCTTTCCT
  GGTGGAAGTA GGTGGCCACT AGGTGCCAGC CTTGCTTTAT GTTTTTTTCT TAATCTCAAA
  TTCTAAGATC CTGAGAGCCA CCGAGTAACC TTTTCCTCCC TTTACCTTTT CCCTCCCTGG
  K
  TGTTTTAATT CCAGATTTGA ATTTTGGCGC GGTCTGGAGG AGGCTTTGCA GTCAAGTAAT
  AGCTATGGCA AGGTCCTCTG AGCCATAAAG AGAAACAAAT GAAAAGGAGA AACTGAAGCC
  AGAGGAAGGG ACTGCCCAAA AAATAGCCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45129677	mCV24092629	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss148565840	ENSMUSSNP941768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
ss319630708	CHEV_1_9539356	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32292246					SNP	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9619500 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	Intron
Rr407602	regulatory region 407602	1317 bp distal
Rr407603	regulatory region 407603	within coordinates
Rr407604	regulatory region 407604	88 bp distal
Rr407605	regulatory region 407605	1241 bp proximal
Rrs1	ribosome biogenesis regulator 1	1820 bp downstream
Tssr5898	transcription start site region 5898	1174 bp downstream
Tssr5899	transcription start site region 5899	1150 bp downstream