rs32292249 SNP Detail

Summary

• ID
  rs32292249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86288538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CAGAGCAAGC TAAAGGCATT
  Y
  GGGAGGAGAC AAGAAGATGA GCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45129680	mCV24369633	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss144876561	ENSMUSSNP2254239	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32292249					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86288538 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Gm71192	predicted gene, 71192	851 bp upstream
Ncl	nucleolin	1416 bp upstream
Rr396146	regulatory region 396146	1200 bp downstream
Rr414541	regulatory region 414541	1427 bp distal
Rr414542	regulatory region 414542	974 bp distal
Rr414543	regulatory region 414543	862 bp distal
Rr414544	regulatory region 414544	361 bp distal
Tssr7749	transcription start site region 7749	1226 bp downstream
Tssr7750	transcription start site region 7750	1124 bp downstream
Tssr12788	transcription start site region 12788	1819 bp upstream
Tssr12789	transcription start site region 12789	1770 bp upstream
Tssr12790	transcription start site region 12790	1435 bp upstream
Tssr12791	transcription start site region 12791	1330 bp upstream
Tssr12792	transcription start site region 12792	850 bp upstream