rs32293225 SNP Detail

Summary

• ID
  rs32293225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34144568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAATCC CACATTTAGA
  AAACCTGGAT GTATTAGTGT GAACATGTAA TCTCTGTAAT AGGGAGGCTT GCCGGCAGCC
  AGTCTAATCA AATTGTTGAG TTACAAGGTC AGAGAGACCC TGCCTTTATA AAGGTATGAA
  GAGTTATCTA AGAGGACAGC TGTGTTAATC CCTGGTTTAC ACACATGCAC ACCTGCACAA
  R
  CAAATACATA CTCATAACTG GTCGGGGATG TAACCCAGGC CTAGTACACA GTACAGCAGC
  GAGGATTCTT CTATGTTGAT TCCTGGTTGG AAACAGATGG TTTTCACTTC ACAATTCTTG
  TCAGCACCTG AGCCACTTGG AAAAAGCATT TCCCAGAGAA TGTTCATAGA CATCACTCTG
  GAGACTTAAT TTGCAAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39385611	mCV23546322	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss49447056	NES12599629	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	A	A	G	A	A
ss147538373	ENSMUSSNP409364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32293225					SNP	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49447056	NES12599629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34144568 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	885 bp downstream
Tssr131026	transcription start site region 131026	1892 bp downstream
Tssr131027	transcription start site region 131027	1457 bp downstream
Tssr131028	transcription start site region 131028	1318 bp downstream
Tssr131029	transcription start site region 131029	494 bp downstream