rs32294118 SNP Detail

Summary

• ID
  rs32294118
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36349330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACTGGCTA TGGAGCCTAG CACACCCATC
  TCACAGATAA GGGGAGAGAG CTATAGAAAC AGTGCTGGAG GTGATAAAAG ATGCACCCag
  cttggcatgg tggtgtatgc ctatagtccc aacactaggg aatcttacat tcaaggccag
  S
  ctgggctaca cagagagact gtcccaagca aacaaCTAAC AAAACAAGCA AAGACAGCAT
  CCCTGTGTGG TGCTATATTC CCCACCCACC CCCACTTTGT CCAGCACAAT TTCAACTGAT
  CTCAGTTCAT TGGCTGGAAG GGCAGGGGGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45130420	mCV27594749	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss148924921	ENSMUSSNP2790896	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss319688341	CHEV_1_36367094	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32294118					SNP	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36349330 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	1680 bp distal
Gm70518	predicted gene, 70518	1904 bp downstream
Rr409285	regulatory region 409285	71 bp distal
Rr409286	regulatory region 409286	537 bp proximal
Tssr6258	transcription start site region 6258	1968 bp downstream
Tssr11252	transcription start site region 11252	626 bp upstream