rs32294589 SNP Detail

Summary

• ID
  rs32294589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC CTCCAGGGGA GCTTTGCTGG
  R
  CTTAAATGAA TTCAGAGATG TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45130329	mCV24595576	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss120009172	PARCsnp_1.18664	PARC_SEQ	INBRED	f	SNP			A	G
ss120012372	PARCsnp_1.08453	PARC_SEQ	INBRED	f	SNP			A	G
ss146187959	ENSMUSSNP860423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss320124219	CHEV_1_174255557	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32294589					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	118 bp proximal
Gm36937	predicted gene, 36937	1765 bp downstream
Gm70847	predicted gene, 70847	854 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	46 bp distal
Rr423525	regulatory region 423525	500 bp distal
Rr423526	regulatory region 423526	310 bp distal
Rr423527	regulatory region 423527	364 bp proximal
Rr423528	regulatory region 423528	471 bp proximal
Rr423529	regulatory region 423529	886 bp proximal
Rr423530	regulatory region 423530	1413 bp proximal
Tssr15210	transcription start site region 15210	792 bp downstream
Tssr15211	transcription start site region 15211	802 bp downstream
Tssr15212	transcription start site region 15212	822 bp downstream