rs32296623 SNP Detail

Summary

• ID
  rs32296623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48493247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCCTTTCTC TCTCTTTCTC TTCCTACCCA CCCCCCAATC CCTGCAACTA ACTATAAAAG
  TAAAAGATGG TATTCTAGGA CAAAGTGGAG TAGACAAAAA TAGCCACTTA GTGGTTGTGT
  TACTTCTTCT TAGAGTCCAT TTAAAAATCT GGGAGACAGC CAGGCGGTAG TGGTACATGC
  CTTTAATCCC AGCACTAGGG AGGCAGAGTC GATCTCTAAG TTAGAGGCCA GTCTGGTCTA
  CAGAGTGAGT TCCAGGACAG TCTTGTCGTC CTGGAAACAG AGAAACTCTG TCTTAGAAAA
  W
  CAAAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA
  GATAAATGGA TCTGGGAGTG ATGCTTACGC CAAGAGTTGG AGCAGAGACC TCCAGCCGCT
  CAGTAACTTG TTCAGCTCAC TGCTGGCTCG CTGGCCAAGT CTAACAGAAG CTTCCACATG
  GTGAGTTGAA CGTCAACATG GGCTGAGACA AAGTTCTCAT AGGAACCCTG CCTGGACTTT
  GTGATAGAGT TAGTACTATC TCAGAAATTG CCACTGATGT GAAAGGTTCT AGAGCACTGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46128837	mCV25161958	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss149207712	ENSMUSSNP770589	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32296623					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48493247 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646924	regulatory region 646924	762 bp distal
Rr646925	regulatory region 646925	1469 bp proximal
Tssr72622	transcription start site region 72622	142 bp downstream
Tssr72623	transcription start site region 72623	164 bp downstream
Tssr72624	transcription start site region 72624	1712 bp downstream
Tssr72625	transcription start site region 72625	1739 bp downstream