rs32297253 SNP Detail

Summary

• ID
  rs32297253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44396169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCTGCT CCATGAAAAG
  TTTTTGTCCT CCTTAAGCTC ATCTTAAAGA CTATTCATGC TGTTAACAAA TTTATCTCTT
  TTATAAACTT ACAAACTACA GGAAACCCAC TCCAATCTAC TTCTTATGGA CTAAATAGTC
  TCCATCCAGG TAAGTACACC TGCCAAGCAA TAGCCTACGT TCTCACTGGC TACCTATTCC
  R
  GAGGGTGAGA TTGCTCTCCT GTTCCTGGGA TTGGGACTCC TCTTACCCCA AAGACCTAAT
  TTTTTTTCTC CCAAACGTAC TTAACTTTAT TCTCTACCTC CTGTGTGTGT GTGTGTGTGT
  TTCAGCATCT TGCCAAATCC AAGCGTTTAC TCAAAATCTA CACATAAGAC AGCTCCAGAG
  AAACAACCCA TAGATGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46128668	mCV27580297	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss149120946	ENSMUSSNP4984155	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32297253					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44396169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18992	CpG island 18992	1235 bp distal
Cpgi18993	CpG island 18993	1639 bp proximal
Rr400296	regulatory region 400296	1550 bp upstream
Tssr66420	transcription start site region 66420	1758 bp upstream
Tssr66421	transcription start site region 66421	1857 bp upstream
Tssr66422	transcription start site region 66422	1895 bp upstream
Vrk3	vaccinia related kinase 3	1880 bp upstream
Zfp473	zinc finger protein 473	within coordinates