rs32297746 SNP Detail

Summary

• ID
  rs32297746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGAATGC TGAAGACAAG
  GCCTTTGACT CAGCCTTGCA GGTTGGGTGG CGTCACGGGC ATCCTGAACA GAGAAGCAGA
  ACCTTCCAGA GCAGGTGGTT GGCTGGTAGT CCACAGAAAG CAGTTGCCCT GAGGTAGAAT
  TGGACAGCCT TCAAGGAAGC CAGTCCTATT CTTCTTGTTC TTCTTGGCAC TAAGGAAACC
  R
  GACATTCCTG AGAACACTGA GATAGGACCA AAAGCTTGCT TGGTTGCTTG ATTTATTGGG
  TGTCACTTTG AGTCCTGGTT GGCCTGGAGT ACTGAGATAG GACCAGAAGC AGCTTTTACT
  CCCTCCCTCC GCCCCCAACC CCCTTCTCTA GATAGGGTGT CGCTATGAGT CCTGGCTGGC
  CTGGAACTAC ATAAACTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46128371	mCV22749496	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		A
ss47255834	NES11555255	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		A	A	A	A	A		A	A	A	A
ss145875075	ENSMUSSNP471419	ENSEMBL	ENSEMBL_Sanger	f	SNP			G											A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32297746					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255834	NES11555255	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220730 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	141 bp upstream
Nupr1	nuclear protein transcription regulator 1	1688 bp downstream
Rr655535	regulatory region 655535	1699 bp distal
Rr655536	regulatory region 655536	within coordinates
Rr655537	regulatory region 655537	335 bp proximal
Rr655538	regulatory region 655538	829 bp proximal
Tssr69045	transcription start site region 69045	1346 bp upstream
Tssr69046	transcription start site region 69046	1687 bp upstream
Tssr69047	transcription start site region 69047	1889 bp upstream