rs32299006 SNP Detail

Summary

• ID
  rs32299006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191821388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAAGCGT GGCCCTGCGG AGCCTGGCTG AGCCCCGGGT
  TCCCAGGGCG GGTCGGAGTG GCATCTGACC TGGGGTAGGT TCATGCACAC ACAGATCGCA
  Y
  GCCCTCTCCT GCAGCCCTTG GTTTTGCAGT CCCCACGCCC CGGGCCTCGG ACCCGCGACC
  TCCGTGCGAA GCCACCAGCG TGCAAGTGCC GCGGGAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45130720	mCV25166209	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146513857	ENSMUSSNP4894056	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32299006					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191821388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1232	CpG island 1232	within coordinates
Gm10516	predicted gene 10516	within coordinates
Gm37055	predicted gene, 37055	267 bp downstream
Rcor3	REST corepressor 3	within coordinates
Rr29207	regulatory region 29207	within coordinates
Tssr15823	transcription start site region 15823	488 bp downstream
Tssr15824	transcription start site region 15824	803 bp downstream
Tssr15825	transcription start site region 15825	864 bp downstream
Tssr15826	transcription start site region 15826	907 bp downstream