rs32304677 SNP Detail

Summary

• ID
  rs32304677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66814184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGGTG CTCTATAGAT
  AGAAGGCAGA TAACACAGGT AGTTCTGCTT GGGTAGAGAT AGGCAAGGGA GATGAACACT
  TGACCTGGGG TCCTGGACTG GCCCAATGGC CACTTGCAGC TGTGGAGCAC TGGAGATGGA
  GTGGGGGCTG AAGGCCCTAG ATCTCAGGTC TTTTGTTTTT AACTGAAGGT ATTAAAAACC
  R
  TGACATCAGG CCATAGTAAG GATCCTGTAA GTCACCAGGC ATCAAAGGCT CTGATACTCA
  TTTTTGGTAC CAATGGCCTT AGATATGCAG GCTGTCTTGA CTTCACATGG GGAATTCATT
  AAAACCACAG CCTATCTCTC AGCTGGAGGC CAGTGCCCCA GCCTTCCTTG TTTGGCTTAG
  AACAGTGGAC CAGCAGCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39387278	mCV23091077	ABI	CRAMUS_MOUSE	f	SNP	G	A					G		G
ss51706575	NES14571306	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G		A	G	G	G		A	A	G	A		G
ss325004061	CHEV_15_66773897	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32304677					SNP	G	A	A	G	G	G	G	A	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51706575	NES14571306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66814184 () rs orientation: forward

Symbol	Name	Function Class
Ndrg1	N-myc downstream regulated gene 1	Intron
Rr503612	regulatory region 503612	1315 bp distal
Tssr134597	transcription start site region 134597	778 bp downstream
Tssr134598	transcription start site region 134598	1690 bp downstream