rs32308142 SNP Detail

Summary

• ID
  rs32308142
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT AACTCCAGTT CCAGACATCT
  K
  GTGCCCTCTT CTGGTCTCCA CAGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45131741	mCV25088199	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss145506421	ENSMUSSNP5460062	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss319982680	CHEV_1_136390309	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32308142					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	764 bp proximal
Rabif	RAB interacting factor	907 bp upstream
Rr396314	regulatory region 396314	732 bp upstream
Rr418926	regulatory region 418926	1993 bp distal
Rr418927	regulatory region 418927	within coordinates
Rr418928	regulatory region 418928	426 bp proximal
Rr418929	regulatory region 418929	998 bp proximal
Rr418930	regulatory region 418930	1439 bp proximal
Tssr8899	transcription start site region 8899	896 bp upstream
Tssr8900	transcription start site region 8900	1004 bp upstream
Tssr8901	transcription start site region 8901	1254 bp upstream