rs32308370 SNP Detail

Summary

• ID
  rs32308370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA GTCCCGATCT GTTTCTTTCA
  R
  CTTGGAAGGT TAAACGGCCC TAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45131271	mCV25408050	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss144943438	ENSMUSSNP5224450	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32308370					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr366958	regulatory region 366958			1054 bp downstream
Rr415586	regulatory region 415586			1964 bp distal
Rr415587	regulatory region 415587			724 bp distal
Rr415588	regulatory region 415588			within coordinates
Rr415589	regulatory region 415589			563 bp proximal
Tssr8065	transcription start site region 8065			1084 bp downstream
Tssr8066	transcription start site region 8066			990 bp downstream
Tssr8067	transcription start site region 8067			920 bp downstream
Tssr8068	transcription start site region 8068			792 bp downstream
Tssr8069	transcription start site region 8069			714 bp downstream
Tssr12938	transcription start site region 12938			1225 bp upstream
Tssr12939	transcription start site region 12939			72 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)			Intron
				Noncoding-Transcript-Variant