rs32308517 SNP Detail

Summary

• ID
  rs32308517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:111935349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGATAC ATGCGTGCTT
  AGCTAATTTC TAAGTAGACT GTGAGCCTCC TGAGAGTCAC TGCAAGCAGG GACTGCTGGT
  CAATTGCAAG GCTCTGGGTG CCTTAAAGGT GAAAGCGAGC CAAATTCTTG TGCCCTTACA
  CCCCACCCCT CCCAGTCAGG GAGGCACCGA TTGGTGAGCC AAAGCTATGC CTCAACCTCA
  R
  CTCTCAAAAC AGCAATACTA AGCTGATGCC AGAAAGCTTG CCTTAGCCTG AGAAGTACAG
  CTTCCTCCAG ACCACCTACT TACTCAGAGA CTGGTAGAAA AAGAAGGTGT TTGCATAGCA
  GGAACTGAAA GAGTAGTAGT GAAGCCCTGG AGGTGGGAGT GGGAGTATAC TTGCGAAATC
  CTCCTTCTTC TTCAGCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
ss47150796	NES11596793	PERLEGEN	MM_PANEL2	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	WSB/EiJ
rs32308517					SNP	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47150796	NES11596793	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:111935349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mical2	microtubule associated monooxygenase, calponin and LIM domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr68564	transcription start site region 68564			451 bp upstream