rs32309596 SNP Detail

Summary

• ID
  rs32309596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91176864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC ATGTGCCACA TGGGGTGGTC
  R
  AAGGATAACT TTCTTCCACT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45131999	mCV24389907	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss60767817	NES16403371	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G	G	A
ss144943395	ENSMUSSNP4267958	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32309596					SNP	G	G	A	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767817	NES16403371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91176864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	754 bp proximal
Rr366958	regulatory region 366958	803 bp upstream
Rr415585	regulatory region 415585	1201 bp distal
Rr415586	regulatory region 415586	within coordinates
Rr415587	regulatory region 415587	679 bp proximal
Rr415588	regulatory region 415588	1435 bp proximal
Tssr8065	transcription start site region 8065	1051 bp upstream
Tssr8066	transcription start site region 8066	1155 bp upstream
Tssr8067	transcription start site region 8067	1169 bp upstream
Tssr8068	transcription start site region 8068	1340 bp upstream
Tssr8069	transcription start site region 8069	1433 bp upstream
Tssr12938	transcription start site region 12938	898 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	548 bp upstream