rs32309845 SNP Detail

Summary

• ID
  rs32309845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGGGTG GTCCTGGGGA
  AGGATTCTCA ATCCAGTGAG CAGCAGAGTT AAATTGAAGA GCGAGTTTTG AAAGAGAAAG
  GACTAGTCAG CCTCGTAGGC TAGTAAGTAG GGTCCGTGAG CGTGGAAGGG AGGGAGTCAC
  AAAGAGGCCA GACCACGCAG GAGGATAGAG CTACCTAGGA AAAGAGGCGG AGCGAAACCT
  R
  GAGGAGAAGT GGAGCATCCT GTGTAGAGGC AGGATAGGGG AAGATGGAAG GGCTAAGGCT
  GGAAAGTCTT TCGTCGGTTG CAGATCTGCC CCCCGGAGCC CCACAATGCT CAGTTGAAGG
  AGGTCCTGTG GACCGCAGCC TCCGCTTTCG CTGCTCCTGG CCTGGCGGGG TCCCTGCCGC
  CTCCCTGCAG TTCCAGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46130697	mCV22871791	ABI	CRAMUS_MOUSE	f	SNP	G	A	G				G		G
ss51478093	NES13969843	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32309845					SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478093	NES13969843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	271 bp distal
Cpgi18933	CpG island 18933	within coordinates
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	251 bp downstream
Rr645966	regulatory region 645966	1418 bp distal
Rr645967	regulatory region 645967	753 bp distal
Rr645968	regulatory region 645968	180 bp distal
Rr645969	regulatory region 645969	683 bp distal
Rr645970	regulatory region 645970	within coordinates
Rr645971	regulatory region 645971	295 bp proximal
Tssr66010	transcription start site region 66010	261 bp downstream
Tssr72135	transcription start site region 72135	692 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates