rs32310048 SNP Detail

Summary

• ID
  rs32310048
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:143580037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCATATGTA CTATACTTGG TACAGTGACA
  GCTCCTAGAA CGATGTTGTA GTAAGTGAAA AGATAAAGGC TCCAAGTAAA GTCTGGGTAA
  TAAATGCATA GGTAGGTTTC ATGGAGTTAA GAGAGTCAAC AATAGTTTTT ATGAATTTTA
  W
  TTCATATACA AATCATTTCC AACCAATTTC TCTTTTTGAT TAATTTATGT TTTTAAGGTT
  AATGATCCTT AAACTCAACG TTGTAAGATA CATGGTTAGT AATTTATAGT GTATAGCAGT
  TAAAGCACGG AAGTTCTACT TTGTTTTTGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45131680	mCV23583657	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss320010264	CHEV_1_145551429	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs32310048					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143580037 () rs orientation: forward

Symbol	Name	Function Class
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component	1406 bp upstream
Cpgi835	CpG island 835	811 bp distal
Gm69373	predicted gene, 69373	886 bp upstream
Rr419927	regulatory region 419927	1848 bp distal
Rr419928	regulatory region 419928	916 bp distal
Rr419929	regulatory region 419929	1366 bp distal
Tssr14091	transcription start site region 14091	1502 bp upstream
Tssr14092	transcription start site region 14092	1470 bp upstream
Tssr14093	transcription start site region 14093	1452 bp upstream