rs32310240 SNP Detail

Summary

• ID
  rs32310240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10980088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAGGTGC TAGATGGTTT
  TTGCCTAGCT TTCCCCATCC CAGAATCTAT AAAGAAAAAG GATTAAATTT GCCACCAAAA
  CACCATTATG CTACCTGCTA TAAGTTGACA CAGATAGTAA CATAATTTGG GGGCTGGAGA
  AGCGGTTCTG CGGTTAAGAA CACTGGCTGT TTCCCAGAGG ACTGACTTTT GCTGCCCAGC
  R
  TTCACGTGTC ACCTTACAGC CATCTTGCCC TCAGATACAA CACCCTCTTC TGGCCTCTGC
  AGGCACCAGG CATGCCTACA CTGCACAGAC ACACATGCAG GCAAAAAACT CGTACCAATT
  ACAAAATAAA ATTTAAAAAT TTAAAGCTTC TTACTTATTT AATCTTTTTG CTTTAGGAGG
  TTTTTTGTTT GCGTCTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39388075	mCV24566916	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147066933	ENSMUSSNP4856273	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32310240					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10980088 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	1787 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	within coordinates
Cpgi6946	CpG island 6946	1339 bp proximal
Gm34315	predicted gene, 34315	within coordinates
Gm52174	predicted gene, 52174	1483 bp upstream
Rr301970	regulatory region 301970	within coordinates
Rr311562	regulatory region 311562	1112 bp proximal
Rr390344	regulatory region 390344	1843 bp downstream
Tssr130700	transcription start site region 130700	1745 bp upstream
Tssr130701	transcription start site region 130701	1778 bp upstream