rs32312314 SNP Detail

Summary

• ID
  rs32312314
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17093875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCCAA GTGCTGGGAT
  TAAAGGCGTG GGCCACCACA CCCGGCCCTC ATTTTCTTTT GAGTCAGGGT CTTGTTTAGA
  CCTCTAGGCT GACCTTGAAC TCTAGGTGAT CTTGCCTCAG CCTCTAGTAT TTTGGGATTA
  CAAGGTACGG ACCATCAAGT CTGGTCCTTC CTTAGAACTT TAGTAACTTT TTACCAATCA
  K
  ATCTGGACTG TGATATTTTT GTTTTTTGTT TTGTTTTTCT TTTTTTTGAG ACAGGTCCGC
  ATGTAGCCTT GGCTAATTTC AAACTCCGTA TGTAGCAAAG GATGACCTTG AACTCCTGAT
  CTTCGTGCCC TCACACCTCC AAGAGATAGA ATTACAGATG TGGGCAACCA AGCCCGGCTT
  TGTATACCTG AATTGGTCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss48150924	NES12129425	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32312314					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48150924	NES12129425	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17093875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8012	CpG island 8012	76 bp proximal
Gm49573	predicted gene, 49573	within coordinates
Rr316836	regulatory region 316836	within coordinates
Rr324991	regulatory region 324991	within coordinates
Rr370056	regulatory region 370056	50 bp upstream
Tmem191	transmembrane protein 191	289 bp upstream
Tssr137285	transcription start site region 137285	280 bp upstream
Tssr137286	transcription start site region 137286	326 bp upstream
Tssr137287	transcription start site region 137287	651 bp upstream