rs32312316 SNP Detail

Summary

• ID
  rs32312316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17094082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGATAT TTTTGTTTTT
  TGTTTTGTTT TTCTTTTTTT TGAGACAGGT CCGCATGTAG CCTTGGCTAA TTTCAAACTC
  CGTATGTAGC AAAGGATGAC CTTGAACTCC TGATCTTCGT GCCCTCACAC CTCCAAGAGA
  TAGAATTACA GATGTGGGCA ACCAAGCCCG GCTTTGTATA CCTGAATTGG TCGGGCGTGA
  Y
  CCGTCTCGGT TGGGTTCGGG CGCCCTCTGC TGCCTATTGT GACGCGGGCC ACCAAGTTAC
  CCAGGCGGTG GAGGTCGGGG CGGAGCTCTG GAGCCATGAC TGAGCCGCAG GAGCAGCTGC
  TGCAGCTGCA GAAGGACAAC CGAGATGGCC GCCTGCGGAA GCAGGAGCTA GAAGAGCTGG
  TGCGTGGGCT GGAAGCCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss48150926	NES12129401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs32312316					SNP	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48150926	NES12129401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17094082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8012	CpG island 8012	within coordinates
Gm49573	predicted gene, 49573	within coordinates
Rr316836	regulatory region 316836	82 bp distal
Rr324991	regulatory region 324991	within coordinates
Rr370056	regulatory region 370056	within coordinates
Tmem191	transmembrane protein 191	82 bp upstream
Tssr137285	transcription start site region 137285	73 bp upstream
Tssr137286	transcription start site region 137286	119 bp upstream
Tssr137287	transcription start site region 137287	444 bp upstream