rs32316129 SNP Detail

Summary

• ID
  rs32316129
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCCTGCT GGGATTAAAA AAAGGTGTGC ACCCTCTGCA
  CCAGCCACAT CTTTAGAATT GTAAAGAAGG CACTTTGTTA TCCCTGTCCA CTATTGGTGT
  K
  ATAGCGTGTG CCTTTTACAT TATTTAATAC TCAAGGATGT GCGTGTACTT TTAGACCTTG
  TCTGATGCCT TTCTAAAGAA CAAGCAAATA GAACAGAATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47652129	NES10269192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32316129					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652129	NES10269192	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	1141 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	1861 bp upstream
Gm72214	predicted gene, 72214	965 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	1365 bp distal
Rr608879	regulatory region 608879	1126 bp distal
Rr608880	regulatory region 608880	1023 bp distal
Rr608881	regulatory region 608881	550 bp distal
Rr608882	regulatory region 608882	367 bp proximal
Tssr45548	transcription start site region 45548	1966 bp downstream
Tssr45549	transcription start site region 45549	1947 bp downstream
Tssr45550	transcription start site region 45550	1808 bp downstream
Tssr45551	transcription start site region 45551	1786 bp downstream
Tssr45552	transcription start site region 45552	1657 bp downstream
Tssr45553	transcription start site region 45553	1337 bp downstream
Tssr50466	transcription start site region 50466	1904 bp upstream
Tssr50467	transcription start site region 50467	1872 bp upstream
Tssr50468	transcription start site region 50468	1852 bp upstream
Tssr50469	transcription start site region 50469	1369 bp upstream